combine_slices

combine_slices(filepath, filenames, use_compression='zlib')

Combine individual slices into a volumetric stack. To control which slices to include, supply a list of filenames.

Return type:

ndarray

Parameters:

• filepath (str) – Path to the directory containing the tiff files

• filenames (list) – List of the file names of the tiff files to combine

• use_compression (str) – Compression type to use for the combined tiff file

Returns:

Array containing the combined stack

Return type:

np.ndarray